PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 917880
Common NameARALYDRAFT_917880
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family FAR1
Protein Properties Length: 182aa    MW: 20906.5 Da    PI: 6.6557
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
917880genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR140.21.1e-1294160374
    FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 
             Y++Y+ + GF+vrk++ +k+  ++++++  +vCsk+g+r+e k     ++ +++ tr+gC+a+++  ++k+g
  917880  94 YKQYGGNHGFNVRKQRRTKK--QEKVVRLLYVCSKQGYRKEPKVI---KSYSQPITRCGCNAHMTCYLQKSG 160
             9************9986665..8889***************9877...999*************99988766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-994160IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MESSHLNGHE IVRDSHYGSI LQVSDESGLL CQNSISEDEA SVSEFEEEDD IANKDDYVQT  60
EEVVALEENK VNEKKDELCI GMEFSSDEAA YIAYKQYGGN HGFNVRKQRR TKKQEKVVRL  120
LYVCSKQGYR KEPKVIKSYS QPITRCGCNA HMTCYLQKSG CVQMKMPFTC LRNWREKKRN  180
L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865711.11e-134hypothetical protein ARALYDRAFT_917880
TrEMBLD7MN811e-134D7MN81_ARALL; Putative uncharacterized protein
STRINGscaffold_801280.11e-133(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM6200613
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.16e-09FAR1 family protein